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PatchFile.cxx

/*=========================================================================

  Program: GDCM (Grassroots DICOM). A DICOM library
  Module:  $URL$

  Copyright (c) 2006-2010 Mathieu Malaterre
  All rights reserved.
  See Copyright.txt or http://gdcm.sourceforge.net/Copyright.html for details.

     This software is distributed WITHOUT ANY WARRANTY; without even
     the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
     PURPOSE.  See the above copyright notice for more information.

=========================================================================*/
/* 
 * The image was a broken file where the Pixel Data element was 8 times too big
 * Apparently multiplying the BitsAllocated to 4 and multiplying the number of
 * frames by 2 would solve the problem
 *
 * This C++ code can be used to patch the header.
 */

#include "gdcmReader.h"
#include "gdcmImageReader.h"
#include "gdcmWriter.h"
#include "gdcmDataSet.h"
#include "gdcmAttribute.h"

int main(int argc, char *argv[])
{
  if( argc < 3 )
    {
    return 1;
    }
  const char *f = argv[1];
  const char *out = argv[2];
  gdcm::Reader r;
  r.SetFileName( f );
  if( !r.Read() )
    {
    return 1;
    }

  gdcm::File &file = r.GetFile();
  gdcm::DataSet& ds = file.GetDataSet();
  // (0028,0100) US 16                                       #   2, 1 BitsAllocated
  // (0028,0101) US 16                                       #   2, 1 BitsStored
  // (0028,0102) US 15                                       #   2, 1 HighBit
  // 
    {
    gdcm::Attribute<0x28,0x100> at;
    at.SetFromDataElement( ds.GetDataElement( at.GetTag() ) );
    if( at.GetValue() != 8 )
      {
      return 1;
      }
    at.SetValue( 32 );
    ds.Replace( at.GetAsDataElement() );
    }
    {
    gdcm::Attribute<0x28,0x101> at;
    at.SetFromDataElement( ds.GetDataElement( at.GetTag() ) );
    if( at.GetValue() != 8 )
      {
      return 1;
      }
    at.SetValue( 32 );
    ds.Replace( at.GetAsDataElement() );
    }
    {
    gdcm::Attribute<0x28,0x102> at;
    at.SetFromDataElement( ds.GetDataElement( at.GetTag() ) );
    if( at.GetValue() != 7 )
      {
      return 1;
      }
    at.SetValue( 31 );
    ds.Replace( at.GetAsDataElement() );
    }
  // (0028,0008) IS [56]                                     #   2, 1 NumberOfFrames

    {
    gdcm::Attribute<0x28,0x8> at;
    at.SetFromDataElement( ds.GetDataElement( at.GetTag() ) );
    at.SetValue( at.GetValue() * 2 );
    ds.Replace( at.GetAsDataElement() );
    }

  gdcm::Writer w;
  w.SetFile( file );
  w.SetCheckFileMetaInformation( false );
  w.SetFileName( out );
  if( !w.Write() )
    {
    return 1;
    }

  // Now let's see if we can read it as an image:
  gdcm::ImageReader ir;
  ir.SetFileName( out );
  if(!ir.Read())
    {
    return 1;
    }
  gdcm::Image &image = ir.GetImage();
  unsigned long len = image.GetBufferLength();
  const gdcm::ByteValue *bv = ir.GetFile().GetDataSet().GetDataElement( gdcm::Tag(0x7fe0,0x0010) ).GetByteValue();
  if( !bv || len != bv->GetLength() )
    {
    return 1;
    }
  std::cout << bv->GetLength() << " " << len << std::endl;

  std::cout << "Sucess to rewrite image !" << std::endl;
  image.Print( std::cout );
  return 0;
}


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