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gdcmCurve.cxx

/*=========================================================================

  Program: GDCM (Grassroots DICOM). A DICOM library
  Module:  $URL$

  Copyright (c) 2006-2010 Mathieu Malaterre
  All rights reserved.
  See Copyright.txt or http://gdcm.sourceforge.net/Copyright.html for details.

     This software is distributed WITHOUT ANY WARRANTY; without even
     the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
     PURPOSE.  See the above copyright notice for more information.

=========================================================================*/
#include "gdcmCurve.h"
#include "gdcmDataElement.h"
#include "gdcmDataSet.h"
#include "gdcmAttribute.h"

#include <vector>

namespace gdcm
{
/*

C.10.2.1 Curve Attribute Descriptions
C.10.2.1.1 Type of data
A description of the Type of Data (50xx,0020) in this curve.
Defined Terms:
TAC = time activity curve PROF = image profile
HIST = histogram ROI = polygraphic region of interest
TABL = table of values FILT = filter kernel
POLY = poly line ECG = ecg data
PRESSURE = pressure data FLOW = flow data
PHYSIO = physio data RESP = Respiration trace
*/

class CurveInternal
{
public:
  CurveInternal():
  Group(0),
  Dimensions(0),
  NumberOfPoints(0),
  TypeOfData(),
  CurveDescription(),
  DataValueRepresentation(0),
  Data() {}

/*
(5004,0000) UL 2316                                     #   4, 1 CurveGroupLength
(5004,0005) US 1                                        #   2, 1 CurveDimensions
(5004,0010) US 1126                                     #   2, 1 NumberOfPoints
(5004,0020) CS [PHYSIO]                                 #   6, 1 TypeOfData
(5004,0022) LO (no value available)                     #   0, 0 CurveDescription
(5000,0030) SH [DPPS\NONE]                              #  10, 2 AxisUnits
(5004,0103) US 0                                        #   2, 1 DataValueRepresentation
(5000,0110) US 0\1                                      #   4, 2 CurveDataDescriptor
(5000,0112) US 0                                        #   2, 1 CoordinateStartValue
(5000,0114) US 300                                      #   2, 1 CoordinateStepValue
(5000,2500) LO [Physio_1]                               #   8, 1 CurveLabel
(5004,3000) OW 0020\0020\0020\0020\0020\0020\0020\0020\0020\0020\0020\0020\0020... # 2252, 1 CurveData
*/
// Identifier need to be in the [5000,50FF] range (no odd number):
  unsigned short Group;
  unsigned short Dimensions;
  unsigned short NumberOfPoints;
  std::string TypeOfData;
  std::string CurveDescription;
  unsigned short DataValueRepresentation;
  std::vector<char> Data;
  void Print(std::ostream &os) const {
    os << "Group           0x" <<  std::hex << Group << std::dec << std::endl;
    os << "Dimensions                         :" << Dimensions << std::endl;
    os << "NumberOfPoints                     :" << NumberOfPoints << std::endl;
    os << "TypeOfData                         :" << TypeOfData << std::endl;
    os << "CurveDescription                   :" << CurveDescription << std::endl;
    os << "DataValueRepresentation            :" << DataValueRepresentation << std::endl;
    unsigned short * p = (unsigned short*)&Data[0];
    for(unsigned short i = 0; i < NumberOfPoints; i+=2)
      {
      os << p[i] << "," << p[i+1] << std::endl;
      }
  }
};

Curve::Curve()
{
  Internal = new CurveInternal;
}

Curve::~Curve()
{
  delete Internal;
}

Curve::Curve(Curve const &ov):Object(ov)
{
  //delete Internal;
  Internal = new CurveInternal;
  // TODO: copy CurveInternal into other...
  *Internal = *ov.Internal;
}

void Curve::Print(std::ostream &os) const
{
  Internal->Print( os );
}

unsigned int Curve::GetNumberOfCurves(DataSet const & ds)
{
  Tag overlay(0x5000,0x0000); // First possible overlay
  bool finished = false;
  unsigned int numoverlays = 0;
  while( !finished )
    {
    const DataElement &de = ds.FindNextDataElement( overlay );
    if( de.GetTag().GetGroup() > 0x50FF ) // last possible curve
      {
      finished = true;
      }
    else if( de.GetTag().IsPrivate() )
      {
      // Move on to the next public one:
      overlay.SetGroup( de.GetTag().GetGroup() + 1 );
      overlay.SetElement( 0 ); // reset just in case...
      }
    else
      {
      // Yeah this is an overlay element
      //if( ds.FindDataElement( Tag(overlay.GetGroup(),0x3000 ) ) )
      if( ds.FindDataElement( Tag(de.GetTag().GetGroup(),0x3000 ) ) )
        {
        // ok so far so good...
        //const DataElement& overlaydata = ds.GetDataElement(Tag(overlay.GetGroup(),0x3000));
        const DataElement& overlaydata = ds.GetDataElement(Tag(de.GetTag().GetGroup(),0x3000));
        if( !overlaydata.IsEmpty() )
          {
          ++numoverlays;
          }
        }
      // Store found tag in overlay:
      overlay = de.GetTag();
      // Move on to the next possible one:
      overlay.SetGroup( overlay.GetGroup() + 2 );
      // reset to element 0x0 just in case...
      overlay.SetElement( 0 );
      }
    }

  return numoverlays;
}

void Curve::Update(const DataElement & de)
{
  assert( de.GetTag().IsPublic() );
  const ByteValue* bv = de.GetByteValue();
  if( !bv ) return; // Discard any empty element (will default to another value)
  assert( bv->GetPointer() && bv->GetLength() );
  std::string s( bv->GetPointer(), bv->GetLength() );
  // What if a \0 can be found before the end of string...
  //assert( strlen( s.c_str() ) == s.size() );

  // First thing check consistency:
  if( !GetGroup() )
    {
    SetGroup( de.GetTag().GetGroup() );
    }
  else // check consistency
    {
    assert( GetGroup() == de.GetTag().GetGroup() ); // programmer error
    }

  //std::cerr << "Tag: " << de.GetTag() << std::endl;
  if( de.GetTag().GetElement() == 0x0000 ) // CurveGroupLength
    {
    // ??
    }
  else if( de.GetTag().GetElement() == 0x0005 ) // CurveDimensions
    {
    Attribute<0x5000,0x0005> at;
    at.SetFromDataElement( de );
    SetDimensions( at.GetValue() );
    }
  else if( de.GetTag().GetElement() == 0x0010 ) // NumberOfPoints
    {
    Attribute<0x5000,0x0010> at;
    at.SetFromDataElement( de );
    SetNumberOfPoints( at.GetValue() );
    }
  else if( de.GetTag().GetElement() == 0x0020 ) // TypeOfData
    {
    SetTypeOfData( s.c_str() );
    }
  else if( de.GetTag().GetElement() == 0x0022 ) // CurveDescription
    {
    SetCurveDescription( s.c_str() );
    }
  else if( de.GetTag().GetElement() == 0x0030 ) // AxisUnits
    {
    gdcmWarningMacro( "TODO" );
    }
  else if( de.GetTag().GetElement() == 0x0103 ) // DataValueRepresentation
    {
    Attribute<0x5000,0x0103> at;
    at.SetFromDataElement( de );
    SetDataValueRepresentation( at.GetValue() );
    }
  else if( de.GetTag().GetElement() == 0x0110 ) // CurveDataDescriptor
    {
      gdcmWarningMacro( "TODO" );
    }
  else if( de.GetTag().GetElement() == 0x0112 ) // CoordinateStartValue
    {
      gdcmWarningMacro( "TODO" );
    }
  else if( de.GetTag().GetElement() == 0x0114 ) // CoordinateStepValue
    {
      gdcmWarningMacro( "TODO" );
    }
  else if( de.GetTag().GetElement() == 0x2500 ) // CurveLabel
    {
      gdcmWarningMacro( "TODO" );
    }
  else if( de.GetTag().GetElement() == 0x3000 ) // CurveData
    {
    SetCurve(bv->GetPointer(), bv->GetLength());
    }
  else
    {
    assert( 0 && "should not happen" );
    }

}

void Curve::SetGroup(unsigned short group) { Internal->Group = group; }
unsigned short Curve::GetGroup() const { return Internal->Group; }
void Curve::SetDimensions(unsigned short dimensions) { Internal->Dimensions = dimensions; }
unsigned short Curve::GetDimensions() const { return Internal->Dimensions; }
void Curve::SetNumberOfPoints(unsigned short numberofpoints) { Internal->NumberOfPoints = numberofpoints; }
unsigned short Curve::GetNumberOfPoints() const { return Internal->NumberOfPoints; }
void Curve::SetTypeOfData(const char *typeofdata) { Internal->TypeOfData = typeofdata; }
const char *Curve::GetTypeOfData() const { return Internal->TypeOfData.c_str(); }

static const char * const TypeOfDataDescription[][2] = {
{ "TAC" , "time activity curve" },
{ "PROF" , "image profile" },
{ "HIST" , "histogram" },
{ "ROI" , "polygraphic region of interest" },
{ "TABL" , "table of values" },
{ "FILT" , "filter kernel" },
{ "POLY" , "poly line" },
{ "ECG" , "ecg data" },
{ "PRESSURE" , "pressure data" },
{ "FLOW" , "flow data" },
{ "PHYSIO" , "physio data" },
{ "RESP" , "Respiration trace" },
{ 0 , 0 }
};
const char *Curve::GetTypeOfDataDescription() const
{
  typedef const char* const (*TypeOfDataDescriptionType)[2];
  TypeOfDataDescriptionType t = TypeOfDataDescription;
  int i = 0;
  const char *p = t[i][0];
  while( p )
    {
    if( Internal->TypeOfData == p )
      {
      break;
      }
    ++i;
    p = t[i][0];
    }
  return t[i][1];
}

void Curve::SetCurveDescription(const char *curvedescription) { Internal->CurveDescription = curvedescription; }
void Curve::SetDataValueRepresentation(unsigned short datavaluerepresentation) { Internal->DataValueRepresentation = datavaluerepresentation; }
unsigned short Curve::GetDataValueRepresentation() const { return Internal->DataValueRepresentation; }

bool Curve::IsEmpty() const
{
  return Internal->Data.empty();
}

void Curve::SetCurve(const char *array, unsigned int length)
{
  if( !array || length == 0 ) return;
  Internal->Data.resize( length );
  std::copy(array, array+length, Internal->Data.begin());
  //assert( 8 * length == (unsigned int)Internal->Rows * Internal->Columns );
  //assert( Internal->Data.size() == length );
}

void Curve::Decode(std::istream &is, std::ostream &os)
{
}

void Curve::GetAsPoints(float *array) const
{
  unsigned short * p = (unsigned short*)&Internal->Data[0];
  assert( Internal->Data.size() == (uint32_t)Internal->NumberOfPoints * 2 );
  assert( Internal->Dimensions == 1 || Internal->Dimensions == 2 );
  assert( Internal->DataValueRepresentation == 0 ); // 0 => unsigned short
  // GE_DLX-8-MONO2-Multiframe.dcm has 969 points ! what in the *** is the last 
  // point doing here ?
  for(unsigned short i = 0; i < (Internal->NumberOfPoints / 2) * 2; i+=2 )
    {
    //std::cout << p[i] << "," << p[i+1] << std::endl;
    array[i+0] = p[i+0];
    array[i+1] = p[i+1];
    array[i+2] = 0;
    }
}

}


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